Cannabis Plant Anatomy and Physiology
Series: Science-Based Growing
Part 1 of 24
View All Posts in This Series
- Cannabis Plant Anatomy and Physiology
- Photosynthesis and Light Requirements
- Plant Hormones and Growth Regulation
- Temperature and Humidity: The Science Behind VPD
- Air Movement and Gas Exchange
- Water Chemistry and pH Management
- Essential Nutrients: What Plants Actually Need
- Nutrient Uptake and Transport Mechanisms
- Organic vs. Synthetic: The Chemistry Reality
- Soil Science for Cannabis Cultivation
- Hydroponic Systems: Physics and Chemistry
- Growing Medium Comparison: Evidence-Based Analysis
- Training Techniques: The Science of Plant Architecture
- Defoliation: When Science Meets Practice
- Flowering Triggers and Light Cycle Science
- Integrated Pest Management: Science-Based Approach
- Plant Disease: Prevention Through Understanding
- Plant Immunity and Defense Responses
- Trichome Development and Harvest Timing
- Maximizing Cannabinoid and Terpene Production
- Quality Assessment: Measuring What Matters
- Phenotype Expression and Environmental Influence
- Yield Optimization: Science vs. Marketing
- Quality Assessment: Measuring What Matters
Understanding how cannabis plants actually work at the anatomical and physiological level is the foundation of successful cultivation. Too many growers operate on assumptions and marketing claims rather than biological reality. This article explores the true structure and function of cannabis plants, debunking common myths while providing the scientific knowledge needed to make informed growing decisions.
Root System Architecture
Primary and Secondary Root Development
Cannabis develops a taproot system with a dominant primary root and extensive lateral branching. The primary root can penetrate 1-2 meters deep in outdoor conditions, while lateral roots spread horizontally to establish the plant’s water and nutrient acquisition network.
The root system serves three critical functions: anchorage, water and nutrient uptake, and storage. Root hairs, microscopic extensions of epidermal cells, dramatically increase surface area for absorption. A single cannabis plant can have millions of root hairs, creating an enormous interface with the growing medium.
Root Zone Physiology
The root zone operates as a complex biological system, not simply a “feeding” area as commonly described. Roots actively transport nutrients through selective membrane processes, requiring energy expenditure. This selectivity means plants don’t simply absorb whatever nutrients are available—they regulate uptake based on physiological needs.
Myth Debunked: Plants don’t “eat” nutrients like animals eat food. Nutrient uptake is an active, energy-requiring process involving specific transport proteins and ion channels. The anthropomorphic idea of “feeding” plants leads to misunderstanding about how nutrition actually works.
Stem Structure and Vascular Transport
Vascular System Organization
Cannabis stems contain two primary vascular tissues: xylem and phloem. Xylem transports water and dissolved minerals from roots to leaves through transpiration-driven mass flow. Phloem moves photosynthetic products (primarily sucrose) from leaves to growing tissues and storage organs.
The vascular cambium, a thin layer of meristematic tissue, produces new xylem and phloem cells throughout the growing season. This secondary growth allows stems to increase in diameter and transport capacity as plants mature.
Water Transport Mechanisms
Water movement through cannabis plants follows the cohesion-tension theory. Transpiration from leaf surfaces creates negative pressure that pulls water upward through xylem vessels. This process can move water from roots to the top of tall plants against gravity, powered entirely by solar energy driving transpiration.
Myth Debunked: Plants don’t “drink” water or actively pump it upward. Water transport is a passive physical process driven by transpiration and the cohesive properties of water molecules. Understanding this helps explain why environmental conditions affecting transpiration directly impact nutrient transport.
Leaf Structure and Function
Photosynthetic Anatomy
Cannabis leaves are the primary photosynthetic organs, containing specialized cells arranged to maximize light capture and gas exchange. The upper epidermis is typically covered with a waxy cuticle to reduce water loss, while the lower epidermis contains numerous stomata for gas exchange.
Mesophyll tissue, located between the upper and lower epidermis, contains most of the leaf’s chloroplasts. Palisade mesophyll cells are elongated and densely packed with chloroplasts to maximize light absorption. Spongy mesophyll provides air spaces for gas diffusion and additional photosynthetic capacity.
Stomatal Function and Regulation
Stomata are microscopic pores that regulate gas exchange and water loss. Guard cells surrounding each stoma can open and close the pore in response to light, CO₂ levels, water status, and hormonal signals. Cannabis typically has 100-300 stomata per square millimeter of leaf surface.
Stomatal behavior directly affects both photosynthesis and water use efficiency. When stomata close to conserve water during stress, CO₂ uptake for photosynthesis also decreases, illustrating the fundamental trade-off between water conservation and carbon fixation.
Trichome Development and Function
Cannabis produces three main types of trichomes: bulbous, capitate-sessile, and capitate-stalked. The largest capitate-stalked trichomes are the primary sites of cannabinoid and terpene biosynthesis. These structures develop from epidermal cells and contain specialized secretory cells that produce and store secondary metabolites.
Trichome development is genetically controlled but influenced by environmental factors including light quality, temperature, and humidity. Understanding trichome biology helps explain why environmental management during flowering affects final product quality.
Flower Structure and Development
Reproductive Anatomy
Cannabis is dioecious, producing male and female flowers on separate plants. Female flowers consist of a single ovule surrounded by a bract and subtended by a sugar leaf. The stigma, extending from the ovule, captures pollen for fertilization.
Male flowers contain five stamens, each with an anther producing pollen. Pollen grains are small (25-30 micrometers) and easily dispersed by wind. Understanding reproductive anatomy is crucial for breeding programs and preventing unwanted pollination.
Flower Development Stages
Cannabis flowering progresses through distinct developmental stages controlled by photoperiod and genetic factors. Pre-flowers appear first, followed by rapid flower cluster development, stigma emergence, and finally senescence as flowers mature.
Each stage has specific nutritional and environmental requirements. Early flowering emphasizes structural development, mid-flowering focuses on metabolite production, and late flowering involves nutrient translocation and senescence processes.
Physiological Processes Integration
Source-Sink Relationships
Cannabis plants operate on source-sink dynamics where photosynthetic tissues (sources) produce carbohydrates that are transported to growing or storage tissues (sinks). During vegetative growth, growing tips and developing leaves are primary sinks. During flowering, developing flowers become dominant sinks.
Understanding source-sink relationships explains why defoliation practices can be counterproductive. Removing photosynthetic tissue (sources) reduces the plant’s capacity to support sink tissues, potentially limiting growth and flower development.
Hormonal Regulation
Plant hormones coordinate growth and development throughout the cannabis plant. Auxins promote cell elongation and apical dominance. Cytokinins stimulate cell division and lateral growth. Gibberellins affect stem elongation and flowering. Abscisic acid regulates stress responses and stomatal closure.
These hormones work in complex interactions, not as simple on/off switches. Training techniques work by manipulating hormone distribution, but understanding the underlying physiology helps predict plant responses and avoid damage.
Environmental Response Mechanisms
Photomorphogenic Responses
Cannabis plants detect and respond to light quality, quantity, and duration through specialized photoreceptors. Phytochromes detect red and far-red light ratios, cryptochromes respond to blue light, and phototropins mediate directional growth responses.
These photoreceptors influence stem elongation, leaf development, flowering initiation, and secondary metabolite production. Understanding photomorphogenic responses helps explain why light spectrum affects plant development beyond simple photosynthetic considerations.
Stress Response Physiology
Cannabis plants have evolved sophisticated mechanisms to detect and respond to environmental stresses. Water stress triggers stomatal closure and osmotic adjustment. Temperature stress activates heat shock proteins and metabolic adjustments. Nutrient stress induces changes in root architecture and transport protein expression.
Myth Debunked: Stress doesn’t automatically increase cannabinoid production. While some environmental factors can influence secondary metabolite synthesis, chronic stress typically reduces overall plant performance and yield. The goal should be optimal growing conditions, not intentional stress.
Practical Applications
Growing Medium Selection
Understanding root physiology helps explain why different growing media work. Soil provides slow-release nutrients and beneficial microorganisms but may limit oxygen availability. Hydroponic systems maximize nutrient and oxygen availability but require more precise management.
The key is matching medium properties to root requirements: adequate oxygen, appropriate moisture retention, and suitable nutrient availability. No single medium is universally superior—success depends on matching system to growing goals and management capabilities.
Training Technique Effectiveness
Plant anatomy explains why training techniques work and their limitations. LST (Low Stress Training) redistributes auxin to promote lateral growth without tissue damage. HST (High Stress Training) techniques like topping remove apical dominance but require recovery time and energy.
Understanding vascular anatomy helps predict how training affects nutrient and water transport. Severe bending or damage to vascular tissues can impair plant function, explaining why gentle, gradual training typically produces better results than aggressive manipulation.
Nutrient Management
Root physiology and vascular transport principles guide effective nutrient management. Nutrients must be in appropriate ionic forms for uptake, and root zone conditions must support active transport processes. pH affects nutrient availability, while oxygen levels influence root function and nutrient uptake capacity.
The concept of “nutrient lockout” reflects the reality that plants actively regulate uptake—high concentrations of some nutrients can interfere with others, not because they’re chemically bound but because transport systems become saturated or inhibited.
Resources
Taiz, L., Zeiger, E., Møller, I. M., & Murphy, A. (2015). Plant Physiology and Development (6th ed.). Sinauer Associates. ISBN: 978-1605353531
Hopkins, W. G., & Hüner, N. P. A. (2008). Introduction to Plant Physiology (4th ed.). John Wiley & Sons. ISBN: 978-0470247662
Raven, P. H., Evert, R. F., & Eichhorn, S. E. (2013). Biology of Plants (8th ed.). W. H. Freeman. ISBN: 978-1429219617
Andre, C. M., Hausman, J. F., & Guerriero, G. (2016). Cannabis sativa: The plant of the thousand and one molecules. Frontiers in Plant Science, 7, 19. DOI: 10.3389/fpls.2016.00019
Petit, J., Salentijn, E. M., Paulo, M. J., et al. (2020). Genetic variability of morphological, flowering, and biomass quality traits in hemp (Cannabis sativa L.). Frontiers in Plant Science, 11, 102. DOI: 10.3389/fpls.2020.00102
Livingston, S. J., Quilichini, T. D., Booth, J. K., et al. (2020). Cannabis glandular trichomes alter morphology and metabolite content during flower maturation. The Plant Journal, 101(1), 37-56. DOI: 10.1111/tpj.14516
Bernstein, N., Gorelick, J., & Koch, S. (2019). Interplay between chemistry and morphology in medical cannabis (Cannabis sativa L.). Industrial Crops and Products, 129, 185-194. DOI: 10.1016/j.indcrop.2018.11.039
Chandra, S., Lata, H., & ElSohly, M. A. (2017). Cannabis sativa L.: Botany and biotechnology. Springer. ISBN: 978-3319545639
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[This post assumes legal hemp/cannabis breeding in compliance with all applicable laws and regulations.]
Series: Science-Based Growing
Part 1 of 24
View All Posts in This Series
- Cannabis Plant Anatomy and Physiology
- Photosynthesis and Light Requirements
- Plant Hormones and Growth Regulation
- Temperature and Humidity: The Science Behind VPD
- Air Movement and Gas Exchange
- Water Chemistry and pH Management
- Essential Nutrients: What Plants Actually Need
- Nutrient Uptake and Transport Mechanisms
- Organic vs. Synthetic: The Chemistry Reality
- Soil Science for Cannabis Cultivation
- Hydroponic Systems: Physics and Chemistry
- Growing Medium Comparison: Evidence-Based Analysis
- Training Techniques: The Science of Plant Architecture
- Defoliation: When Science Meets Practice
- Flowering Triggers and Light Cycle Science
- Integrated Pest Management: Science-Based Approach
- Plant Disease: Prevention Through Understanding
- Plant Immunity and Defense Responses
- Trichome Development and Harvest Timing
- Maximizing Cannabinoid and Terpene Production
- Quality Assessment: Measuring What Matters
- Phenotype Expression and Environmental Influence
- Yield Optimization: Science vs. Marketing
- Quality Assessment: Measuring What Matters